Synchronization and semantization in deep spiking networks.

Sonja Grün

Jonas Oberste-Frielinghaus Anno C. Kurth Julian Göltz Laura Kriener Junji Ito Mihai A. Petrovici Sonja Grün Synchronization and semantization in deep spiking networks. 2025 August abs/2508.12975 CoRR https://doi.org/10.48550/arXiv.2508.12975 db/journals/corr/corr2508.html#abs-2508-12975 streams/journals/corr

Laurène Carminatti Lucio Condro Alexa Riehle Sonja Grün Thomas Brochier Emmanuel Daucé Non-instructed Motor Skill Learning in Monkeys: Insights from Deep Reinforcement Learning Models. 263-274 2024 SAB https://doi.org/10.1007/978-3-031-71533-4_20 conf/sab/2024 db/conf/sab/sab2024.html#CarminattiCRGBD24 streams/conf/sab

Robin Gutzen Sonja Grün Michael Denker Evaluating the statistical similarity of neural network activity and connectivity via eigenvector angles. 104813 2023 January 223 Biosyst. https://doi.org/10.1016/j.biosystems.2022.104813 db/journals/biosystems/biosystems223.html#GutzenGD23

Alessandra Stella Pietro Quaglio Emiliano Torre Sonja Grün 3d-SPADE: Significance evaluation of spatio-temporal patterns of various temporal extents. 2019 185 Biosyst. https://doi.org/10.1016/j.biosystems.2019.104022 https://www.wikidata.org/entity/Q92869841 db/journals/biosystems/biosystems185.html#StellaQTG19

Julia Sprenger Lyuba Zehl Jana Pick Michael Sonntag Jan Grewe Thomas Wachtler Sonja Grün Michael Denker odMLtables: A User-Friendly Approach for Managing Metadata of Neurophysiological Experiments. 2019 13 Frontiers Neuroinformatics https://doi.org/10.3389/fninf.2019.00062 https://www.wikidata.org/entity/Q90704655 db/journals/fini/fini13.html#SprengerZPSGWGD19 62

Han-Gue Jo Thilo Kellermann Conrad Baumann Junji Ito Barbara Schulte Holthausen Frank Schneider Sonja Grün Ute Habel Distinct modes of top-down cognitive processing in the ventral visual cortex. 201-213 2019 193 NeuroImage https://doi.org/10.1016/j.neuroimage.2019.02.068 https://www.wikidata.org/entity/Q92230363 db/journals/neuroimage/neuroimage193.html#JoKBIHSGH19

Pietro Quaglio Vahid Rostami Emiliano Torre Sonja Grün Methods for identification of spike patterns in massively parallel spike trains. 57-80 2018 112 Biol. Cybern. 1-2 https://doi.org/10.1007/s00422-018-0755-0 https://www.wikidata.org/entity/Q52590593 db/journals/bc/bc112.html#QuaglioRTG18

Robin Gutzen Michael von Papen Guido Trensch Pietro Quaglio Sonja Grün Michael Denker Reproducible Neural Network Simulations: Statistical Methods for Model Validation on the Level of Network Activity Data. 2018 12 Frontiers Neuroinformatics https://doi.org/10.3389/fninf.2018.00090 https://www.wikidata.org/entity/Q60947212 db/journals/fini/fini12.html#GutzenPTQGD18 90

Pietro Quaglio Alper Yegenoglu Emiliano Torre Dominik M. Endres Sonja Grün Detection and Evaluation of Spatio-Temporal Spike Patterns in Massively Parallel Spike Train Data with SPADE. 2017 11 Frontiers Comput. Neurosci. https://doi.org/10.3389/fncom.2017.00041 https://www.wikidata.org/entity/Q36396462 db/journals/ficn/ficn11.html#QuaglioYTEG17 41

Vahid Rostami PierGianLuca Porta Mana Sonja Grün Moritz Helias Bistability, non-ergodicity, and inhibition in pairwise maximum-entropy models. 2017 13 PLoS Comput. Biol. 10 https://doi.org/10.1371/journal.pcbi.1005762 https://www.wikidata.org/entity/Q42685087 db/journals/ploscb/ploscb13.html#RostamiMGH17

Lyuba Zehl Florent Jaillet Adrian Stoewer Jan Grewe Andrey Sobolev Thomas Wachtler Thomas Brochier Alexa Riehle Michael Denker Sonja Grün Handling Metadata in a Neurophysiology Laboratory. 2016 10 Frontiers Neuroinformatics https://doi.org/10.3389/fninf.2016.00026 https://www.wikidata.org/entity/Q27314008 db/journals/fini/fini10.html#ZehlJSGSWBRDG16 26

Emiliano Torre Carlos Canova Michael Denker George L. Gerstein Moritz Helias Sonja Grün ASSET: Analysis of Sequences of Synchronous Events in Massively Parallel Spike Trains. 2016 12 PLoS Comput. Biol. 7 https://doi.org/10.1371/journal.pcbi.1004939 https://www.wikidata.org/entity/Q36078716 db/journals/ploscb/ploscb12.html#TorreCDGHG16

Alper Yegenoglu Pietro Quaglio Emiliano Torre Sonja Grün Dominik M. Endres Exploring the Usefulness of Formal Concept Analysis for Robust Detection of Spatio-temporal Spike Patterns in Massively Parallel Spike Trains. 3-16 2016 ICCS https://doi.org/10.1007/978-3-319-40985-6_1 https://www.wikidata.org/entity/Q57988610 conf/iccs/2016 db/conf/iccs/iccs2016.html#YegenogluQTGE16 Johanna Senk Alper Yegenoglu Olivier Amblet Yury Brukau Andrew P. Davison David Roland Lester Anna Lührs Pietro Quaglio Vahid Rostami Andrew Rowley Bernd Schuller Alan Barry Stokes Sacha Jennifer van Albada Daniel Zielasko Markus Diesmann Benjamin Weyers Michael Denker Sonja Grün A Collaborative Simulation-Analysis Workflow for Computational Neuroscience Using HPC. 243-256 2016 JHPCS https://doi.org/10.1007/978-3-319-53862-4_21 https://www.wikidata.org/entity/Q57988577 conf/jhpcs/2016 db/conf/jhpcs/jhpcs2016.html#SenkYABDLLQRRSS16

Tomislav Milekovic Wilson Truccolo Sonja Grün Alexa Riehle Thomas Brochier Local field potentials in primate motor cortex encode grasp kinetic parameters. 338-355 2015 114 NeuroImage https://doi.org/10.1016/j.neuroimage.2015.04.008 https://www.wikidata.org/entity/Q27306866 db/journals/neuroimage/neuroimage114.html#MilekovicTGRB15

Michael Denker Sonja Grün Designing Workflows for the Reproducible Analysis of Electrophysiological Data. 58-72 2015 BrainComp https://doi.org/10.1007/978-3-319-50862-7_5 https://www.wikidata.org/entity/Q57988603 conf/braincomp/2015 db/conf/braincomp/braincomp2015.html#DenkerG15 Sonja Grün Spike Train Analysis: Overview. 2014 Encyclopedia of Computational Neuroscience https://doi.org/10.1007/978-1-4614-7320-6_776-1 reference/cn/2014 db/reference/cn/cn2014.html#Grun14 Sonja Grün Surrogate Data for Evaluation of Spike Correlation. 2014 Encyclopedia of Computational Neuroscience https://doi.org/10.1007/978-1-4614-7320-6_411-1 reference/cn/2014 db/reference/cn/cn2014.html#Grun14a Sonja Grün Unitary Event Analysis. 2014 Encyclopedia of Computational Neuroscience https://doi.org/10.1007/978-1-4614-7320-6_412-1 reference/cn/2014 db/reference/cn/cn2014.html#Grun14b

Emiliano Torre David Picado-Muiño Michael Denker Christian Borgelt Sonja Grün Statistical evaluation of synchronous spike patterns extracted by frequent item set mining. 2013 7 Frontiers Comput. Neurosci. https://doi.org/10.3389/fncom.2013.00132 https://www.wikidata.org/entity/Q42108758 db/journals/ficn/ficn7.html#TorrePDBG13 132

David Picado-Muiño Christian Borgelt Denise Berger George L. Gerstein Sonja Grün Finding neural assemblies with frequent item set mining. 2013 7 Frontiers Neuroinformatics https://doi.org/10.3389/fninf.2013.00009 https://www.wikidata.org/entity/Q41245401 db/journals/fini/fini7.html#Picado-MuinoBBGG13 9

Gordon Pipa Sonja Grün Carl van Vreeswijk Impact of Spike Train Autostructure on Probability Distribution of Joint Spike Events. 1123-1163 2013 25 Neural Comput. 5 https://doi.org/10.1162/NECO_a_00432 https://www.wikidata.org/entity/Q46976321 db/journals/neco/neco25.html#PipaGV13

Matthias Schultze-Kraft Markus Diesmann Sonja Grün Moritz Helias Noise Suppression and Surplus Synchrony by Coincidence Detection. 2013 9 PLoS Comput. Biol. 4 https://doi.org/10.1371/journal.pcbi.1002904 https://www.wikidata.org/entity/Q34671650 db/journals/ploscb/ploscb9.html#Schultze-KraftDGH13

Hideaki Shimazaki Shun-ichi Amari Emery N. Brown Sonja Grün State-Space Analysis of Time-Varying Higher-Order Spike Correlation for Multiple Neural Spike Train Data. 2012 8 PLoS Comput. Biol. 3 https://doi.org/10.1371/journal.pcbi.1002385 https://www.wikidata.org/entity/Q30000858 db/journals/ploscb/ploscb8.html#ShimazakiABG12

Christian Borgelt Christian Braune Tobias Kötter Sonja Grün New algorithms for finding approximate frequent item sets. 903-917 2012 16 Soft Comput. 5 https://doi.org/10.1007/s00500-011-0776-2 https://www.wikidata.org/entity/Q66692697 db/journals/soco/soco16.html#BorgeltBKG12

Christian Braune Christian Borgelt Sonja Grün Assembly Detection in Continuous Neural Spike Train Data. 78-89 2012 IDA https://doi.org/10.1007/978-3-642-34156-4_9 conf/ida/2012 db/conf/ida/ida2012.html#BrauneBG12 Christian Braune Christian Borgelt Sonja Grün Finding Ensembles of Neurons in Spike Trains by Non-linear Mapping and Statistical Testing. 55-66 2011 IDA https://doi.org/10.1007/978-3-642-24800-9_8 conf/ida/2011 db/conf/ida/ida2011.html#BrauneBG11

Denise Berger Christian Borgelt Sebastien Louis Abigail Morrison Sonja Grün Efficient Identification of Assembly Neurons within Massively Parallel Spike Trains. 2010 2010 Comput. Intell. Neurosci. https://doi.org/10.1155/2010/439648 https://www.wikidata.org/entity/Q37369088 db/journals/cin/cin2010.html#BergerBLMG10 439648:1-439648:18

Benjamin Staude Sonja Grün Stefan Rotter Higher-order correlations in non-stationary parallel spike trains: statistical modeling and inference. 2010 4 Frontiers Comput. Neurosci. https://doi.org/10.3389/fncom.2010.00016 https://www.wikidata.org/entity/Q42725349 db/journals/ficn/ficn4.html#StaudeGR10 16

Sebastien Louis George L. Gerstein Sonja Grün Markus Diesmann Surrogate Spike Train Generation Through Dithering in Operational Time. 2010 4 Frontiers Comput. Neurosci. https://doi.org/10.3389/fncom.2010.00127 https://www.wikidata.org/entity/Q42382140 db/journals/ficn/ficn4.html#LouisGGD10 127

Benjamin Staude Stefan Rotter Sonja Grün CuBIC: cumulant based inference of higher-order correlations in massively parallel spike trains. 327-350 2010 29 J. Comput. Neurosci. 1-2 https://doi.org/10.1007/s10827-009-0195-x https://www.wikidata.org/entity/Q41880595 db/journals/jcns/jcns29.html#StaudeRG10

Michael Denker Alexa Riehle Markus Diesmann Sonja Grün Estimating the contribution of assembly activity to cortical dynamics from spike and population measures. 599-613 2010 29 J. Comput. Neurosci. 3 https://doi.org/10.1007/s10827-010-0241-8 https://www.wikidata.org/entity/Q34300530 db/journals/jcns/jcns29.html#DenkerRDG10

Sebastien Louis Christian Borgelt Sonja Grün Complexity distribution as a measure for assembly size and temporal precision. 705-712 2010 23 Neural Networks 6 https://doi.org/10.1016/j.neunet.2010.05.004 https://www.wikidata.org/entity/Q44633711 db/journals/nn/nn23.html#LouisBG10

Sonja Grün Denise Berger Christian Borgelt Identification of neurons participating in cell assemblies. 3493-3496 2009 ICASSP https://doi.org/10.1109/ICASSP.2009.4960378 https://doi.ieeecomputersociety.org/10.1109/ICASSP.2009.4960378 https://www.wikidata.org/entity/Q57988693 conf/icassp/2009 db/conf/icassp/icassp2009.html#GrunBB09 Hideaki Shimazaki Shun-ichi Amari Emery N. Brown Sonja Grün State-space analysis on time-varying correlations in parallel spike sequences. 3501-3504 2009 ICASSP https://doi.org/10.1109/ICASSP.2009.4960380 https://doi.ieeecomputersociety.org/10.1109/ICASSP.2009.4960380 https://www.wikidata.org/entity/Q57988704 conf/icassp/2009 db/conf/icassp/icassp2009.html#ShimazakiABG09

Benjamin Staude Stefan Rotter Sonja Grün Can Spike Coordination Be Differentiated from Rate Covariation? 1973-1999 2008 20 Neural Comput. 8 https://doi.org/10.1162/neco.2008.06-07-550 https://www.wikidata.org/entity/Q43691778 db/journals/neco/neco20.html#StaudeRG08

Martin P. Nawrot Clemens Boucsein Victor Rodriguez-Molina Ad Aertsen Sonja Grün Stefan Rotter Serial interval statistics of spontaneous activity in cortical neurons in vivo and in vitro. 1717-1722 2007 70 Neurocomputing 10-12 https://doi.org/10.1016/j.neucom.2006.10.101 https://www.wikidata.org/entity/Q57988728 db/journals/ijon/ijon70.html#NawrotBRAGR07

Gordon Pipa Alexa Riehle Sonja Grün Validation of task-related excess of spike coincidences based on NeuroXidence. 2064-2068 2007 70 Neurocomputing 10-12 https://doi.org/10.1016/j.neucom.2006.10.142 https://www.wikidata.org/entity/Q57988742 db/journals/ijon/ijon70.html#PipaRG07

Michael Denker Sébastien Roux Marc Timme Alexa Riehle Sonja Grün Phase synchronization between LFP and spiking activity in motor cortex during movement preparation. 2096-2101 2007 70 Neurocomputing 10-12 https://doi.org/10.1016/j.neucom.2006.10.088 https://www.wikidata.org/entity/Q57988720 db/journals/ijon/ijon70.html#DenkerRTRG07

Denise Berger David J. Warren Richard A. Normann Amos Arieli Sonja Grün Spatially organized spike correlation in cat visual cortex. 2112-2116 2007 70 Neurocomputing 10-12 https://doi.org/10.1016/j.neucom.2006.10.141 https://www.wikidata.org/entity/Q57988735 db/journals/ijon/ijon70.html#BergerWNAG07

Antonio Pazienti Markus Diesmann Sonja Grün Bounds of the Ability to Destroy Precise Coincidences by Spike Dithering. 428-437 2007 conf/bvai/2007 BVAI https://doi.org/10.1007/978-3-540-75555-5_41 db/conf/bvai/bvai2007.html#PazientiDG07 Sonja Grün Moshe Abeles Markus Diesmann Impact of Higher-Order Correlations on Coincidence Distributions of Massively Parallel Data. 96-114 2007 Summer School on Neural Networks https://doi.org/10.1007/978-3-540-88853-6_8 conf/nn/2007 db/conf/nn/nn2007.html#GrunAD07

Antonio Pazienti Sonja Grün Robustness of the significance of spike synchrony with respect to sorting errors. 329-342 2006 21 J. Comput. Neurosci. 3 https://doi.org/10.1007/s10827-006-8899-7 https://www.wikidata.org/entity/Q52930997 db/journals/jcns/jcns21.html#PazientiG06

Gabriela Czanner Sonja Grün Satish Iyengar Theory of the Snowflake Plot and Its Relations to Higher-Order Analysis Methods. 1456-1479 2005 17 Neural Comput. 7 https://doi.org/10.1162/0899766053723041 https://www.wikidata.org/entity/Q81759546 db/journals/neco/neco17.html#CzannerGI05

Sonja Grün Alexa Riehle Markus Diesmann Effect of cross-trial nonstationarity on joint-spike events. 335-351 2003 88 Biol. Cybern. 5 https://doi.org/10.1007/s00422-002-0386-2 https://www.wikidata.org/entity/Q47908301 db/journals/bc/bc88.html#GrunRD03

Gordon Pipa Markus Diesmann Sonja Grün Significance of joint-spike events based on trial-shuffling by efficient combinatorial methods. 79-86 2003 8 Complex. 4 https://doi.org/10.1002/cplx.10085 db/journals/complexity/complexity8.html#PipaDG03

Viktor Gál Sonja Grün Ronald Tetzlaff Analysis of Multidimensional Neural Activity Via CNN-UM. 479-487 2003 13 Int. J. Neural Syst. 6 https://doi.org/10.1142/S0129065703001789 https://www.wikidata.org/entity/Q79799888 db/journals/ijns/ijns13.html#GalGT03

Gordon Pipa Sonja Grün Non-parametric significance estimation of joint-spike events by shuffling and resampling. 31-37 2003 52-54 Neurocomputing https://doi.org/10.1016/S0925-2312(02)00823-8 https://www.wikidata.org/entity/Q57988756 db/journals/ijon/ijon52.html#PipaG03

Gaby Schneider Sonja Grün Analysis of higher-order correlations in multiple parallel processes. 771-777 2003 52-54 Neurocomputing https://doi.org/10.1016/S0925-2312(02)00772-5 db/journals/ijon/ijon52.html#SchneiderG03

Sonja Grün Markus Diesmann Ad Aertsen Unitary Events in Multiple Single-Neuron Spiking Activity: I. Detection and Significance. 43-80 2002 14 Neural Comput. 1 https://doi.org/10.1162/089976602753284455 https://www.wikidata.org/entity/Q57988764 db/journals/neco/neco14.html#GrunDA02

Sonja Grün Markus Diesmann Ad Aertsen Unitary Events in Multiple Single-Neuron Spiking Activity: II. Nonstationary Data. 81-119 2002 14 Neural Comput. 1 https://doi.org/10.1162/089976602753284464 https://www.wikidata.org/entity/Q30667119 db/journals/neco/neco14.html#GrunDA02a

Sonja Grün Unitary joint events in multiple neuron spiking activity: detection, significance, and interpretation. 1996 1-104 Deutsch Ruhr University Bochum, Germany 3-8171-1506-7 https://d-nb.info/947252029 Alexa Riehle Sonja Grün Ad Aertsen Jean Requin Signatures of Dynamic Cell Assemblies in Monkey Motor Cortex. 673-678 1996 conf/icann/1996 ICANN db/conf/icann/icann1996.html#RiehleGAR96 https://doi.org/10.1007/3-540-61510-5_114

Laura Martignon H. Von Hassein Sonja Grün Ad Aertsen Günther Palm Detecting higher-order interactions among the spiking events in a group of neurons. 69-81 1995 73 Biol. Cybern. 1 https://doi.org/10.1007/BF00199057 https://www.wikidata.org/entity/Q57988799 db/journals/bc/bc73.html#MartignonHGAP95

Moshe Abeles Ad Aertsen Sacha J. van AlbadaSacha Jennifer van Albada Shun-ichi Amari Olivier Amblet Amos Arieli Conrad Baumann Denise Berger Christian Borgelt Clemens Boucsein Christian Braune Thomas Brochier Emery N. Brown Yury Brukau Carlos Canova Laurène Carminatti Lucio Condro Gabriela Czanner Emmanuel Daucé Andrew P. Davison Michael Denker Markus Diesmann Dominik M. Endres Viktor Gál George L. Gerstein Julian Göltz Jan Grewe Robin Gutzen Ute Habel H. Von Hassein Moritz Helias Barbara Schulte Holthausen Junji Ito Satish Iyengar Florent Jaillet Han-Gue Jo Thilo Kellermann Tobias Kötter Laura Kriener Anno C. Kurth David R. LesterDavid Roland Lester Sebastien Louis Anna Lührs PierGianLuca Porta Mana Laura Martignon Tomislav Milekovic Abigail Morrison Martin P. Nawrot Richard A. Normann Jonas Oberste-Frielinghaus Günther Palm Michael von Papen Antonio Pazienti Mihai A. Petrovici David Picado-Muiño Jana Pick Gordon Pipa Pietro Quaglio Jean Requin Alexa Riehle Victor Rodriguez-Molina Vahid Rostami Stefan Rotter Sébastien Roux Andrew Rowley Frank Schneider Gaby Schneider Bernd Schuller Matthias Schultze-Kraft Johanna Senk Hideaki Shimazaki Andrey Sobolev Michael Sonntag Julia Sprenger Benjamin Staude Alessandra Stella Adrian Stoewer Alan B. StokesAlan Barry Stokes Ronald Tetzlaff Marc Timme Emiliano Torre Guido Trensch Wilson A. TruccoloWilson Truccolo Carl van Vreeswijk Thomas Wachtler David J. Warren Benjamin Weyers Alper Yegenoglu Lyuba Zehl Daniel Zielasko